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The issue was beyond bizarre - I tried many things and tried to create even basic image. I even went ahead and tried to run basic ubuntu image but it was failing on
apt-get update
(was using different URLs than my local one even though SHA was the same). In the end I wasn't able why it was failing but - EB was displaying error that newer platform is available and it's recommended to upgrade. Launching new instance (for test) of "Docker on Amazon Linux 2" resulted in issue being gone thus I decided to upgrade EB environment version (from 3.1.0 to 3.4.x) and afterwards build stated to work. Those are exactly the same machines spec wise but with newer docker version (2 years old vs current one) and newer kernel (which maybe affected how memory and threads are allocated). In the end, the issue is resolved and wasn't caused by jlink but rather yet for old version of linux on Agent.
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Task
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Normal
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